Friday, July 12, 2013
Friday Flora Littoral/litter edition
A lovely day at the dunes a week or so ago. The dunes are a most interesting ecosystem--it seems you always find fascinating ecosystems in crappy environments, and a sand dune is a pretty crappy environment for a plant. The beach is also of interest, at low tide it's flat and well over a hundred meters from dunes to water.
This being a Pacific coast beach in 2013, there was plenty of garbage to be picked up. I hiked out with thirty pounds of fishing float and styrofoam and nylon rope on a stick, carried like a yoke. Brother M. & sweetie carried crammed-full knapsacks and bags of plastic bottles from Korea, Japan, Hong Kong, and elsewhere. The beach is lovely, but it is so hard to see all the debris we have put there and not think of this. Warning--link will make you feel very, very bad.
Thursday, September 13, 2012
About that paper on organic food...
Saturday, June 23, 2012
Views may differ
I subscribe to a handful of magazines, and it can be amusing how differently they see the same thing. As a tree-hugger, I get the official organ of the Sierra Club. Nerd that I am, I get Science, official organ of the AAAS. I recently started getting The Economist, which I like for good writing and its acknowledgement of the existence of countries other than the US and the EU, but seems to be the official organ of people with a deal of money who want to make damn sure that they will always get more. Needless to say, how these rags see the same thing often differs.
What sets me off on this observation is the latter magazine's special feature on the Arctic in an era of climate change. You might view the Arctic as being kind of like a distant uncle--almost a stranger, partly because he's so damn hostile that he tries to kill you when you visit, but really interesting and exotic. We are in a situation where we are just starting to find out some amazing things about this uncle--but at the same time, we know that he's dying. All three magazines acknowledge that the Arctic that humanity has known for all of recorded history is toast, and own that it is due to human activity*. It's their views of the basic facts that vary.
Sierra's is boringly predictable, if justified--their hair is on fire. Science is more interesting. They remind me of a dispassionate doctor, attentively monitoring the pulse of the dying uncle, reporting the ebb and flow (actually, just the ebb) of arctic ice, the disappearance of habitat, the relentless northward creep of ecosystems, pointing out calmly exactly what is going on and how and why. Occasionally there will be an editorial suggesting that, while the uncle is dying, we really ought to at least slow the rate of decay. These editorial outbursts are rare, and as striking as Star Trek's Spock breaking down in tears.
And then there's The Economist, far and away the most interesting in how it views the matter--in the way that sociopaths are interesting. The entire thrust of the special feature on the Arctic was this: Our rich, fascinating uncle, who has been affecting our lives for as long as we have lived, and has so much to tell us, is dying. Whoohoo! I hear he has a gold watch--we can cash that in! He's got property that we can liquidate for profit, profit, PROFIT! We can actually hasten his demise by trying to get at this stuff--but he won't care if he's dead, and it will get us the stuff quicker! Hell, he's going to die anyway, so it's practically a moral obligation to hurry up! What? Oh, yeah, I suppose it's sad he's dying, but hey, PROFIT!!!
Oh well. I suppose I should give The Economist some credit for being arch-conservative and actually acknowledging anthropogenic climate change as a solid, undisputed fact. It's how you can tell The Economist is not an American magazine.
Saturday, August 13, 2011
Comparing apples to apples

But a recent review article makes a valiant effort at making such a comparison. Which is more efficient—this solar panel:
(The answer is coming…but make your guess now!)
It’s useful to note that this really is an apples-to-apples comparison. We’re used to thinking of life as being powered by chemical energy—you know, breaking down ATP or burning glucose, or photosynthesis making glucose. It may come as a shock that the energy underlying all these chemical processes is electrical energy—the movement of electrons from high-energy states to low energy states.
A surface view of what goes on in a photosynthesizing leaf is that energy from sunlight is used to combine carbon dioxide and water to make glucose. However, a deeper view is that this is an electrical process. Energy from sunlight is used to take a low-voltage electron, one slumming around on a molecule of water, and exalt it to an amazingly high potential. Once energized, the electron can be put onto a carbon atom*. This trick is managed by a handful of pigments, including chlorophyll, and a whole mess of protein enzymes.
The point of chlorophyll is to do the first part of photosynthesis: use light energy to give an electron a kick in the pants. Chlorophyll absorbs only certain colors of light. It loves blue and red, can use a little green and infrared, but essentially can’t use any of the other UV or other light energy that hits the earth. Different colors of light have different energies, which is why you will get a nasty burn from UV, but not red light. When chlorophyll absorbs blue light, it wastes a bunch of the energy stepping the light down in energy until it’s essentially the same energy as red light. Only then will it energize an electron, and the remaining energy is wasted as heat.
So here’s one powerful strike against photosynthesis—it only uses a fraction of the solar energy that hits the earth, and it makes inefficient use of most of that fraction. Compare that with a silicon solar cell: in principle, it can make use of any photon from UV through the visible spectrum to far infra-red. Here’s a chart (very loosely adapted from Blankenship et al) showing how many photons of different colors hit the earth:
So, lots of different colors besides the visible ROY G BIV hit the earth. In fact, since a UV photon packs more energy than a visible photon, most of the energy hitting the earth is invisible. How many of these photons—how much of the sun’s energy—can photosynthesis use?
Not so much—it can’t make much use of yellow or green, or any of the UV. How does this compare with a silicon solar cell?
The second part of photosynthesis is the synthesis: using a hot-to-trot electron to make glucose. From a casual inspection, this is amazingly efficient—nearly 100% efficient, in that every electron that gets energized finds its way to glucose, without any losses. However, this estimate has to be tempered by biological reality. Unlike solar cells, whose raison d’etre is to make voltage for our use, the point of a plant—a point shaped by billions of years of evolution—is to make another plant. So, this photosynthetic system is not just making glucose for us to burn, it’s making membranes and proteins and pigments and DNA and so on. If we measure efficiency in terms of how much of the original sunlight gets converted into energy we can use, 100% gets whittled down to slightly over 1%.
How does this compare with a silicon solar cell? The best of these converts photon energy into voltage with an efficiency of about 18%. If we want to make an apples-to-apples comparison with a leaf, then we can use our solar cell to electrolyse water and make hydrogen gas. This process has some efficiency losses, so it brings the efficiency of a silicon solar cell down to about 14%.
OK—did you guess right about which was more efficient? I sure didn’t. But, as the authors say, “the efficiency advantage clearly goes to photovoltaic systems.”
So, is silicon really greener than a leaf? Well, yes and no. photosynthesis is an evolved, not a designed system. So, many key elements of photosynthesis were jury-rigged from other parts. And, if you start with a jury-rigged system, there’s going to be severe limits on how much it can be improved. (The authors of this review article use a wonderful euphemism, “legacy biochemistry,” to describe this historical baggage that all living things carry around.) Also, there’s the pesky fact that organisms are interested in making more organisms, not helping us.
However, we now know enough about biology to do a little bio-engineering. We have reached a point where we can contemplate taking an inefficient, evolved system and subjecting it to some intelligent re-design. We can make the components more efficient, and make the system’s main purpose energy production rather than reproduction.
Chlorophyll is a good start. It’s thought to have evolved on earth at a time when other organisms had already figured out a way to use green wavelengths of light for making energy. (These organisms are still around—they give salt ponds their spectacular purple hue. If you take the spectrum of visible light and absorb all the green and a little yellow-orange, as these guys do, you are left with purple.) Therefore, chlorophyll evolved to make use of the leftovers, blue and red. UV and infrared were eschewed because they’re just too dangerous for living things to deal with. Some researchers have been tinkering with modifications to chlorophyll, and have succeeded in making it absorb new wavelengths of light.
The synthesis part of photosynthesis is also subject to tinkering: the enzyme that starts the process of making glucose is notoriously inefficient, since it first evolved on earth when there was a much higher concentration of CO2 in the atmosphere, and virtually no oxygen. In this light, it is unsurprising that this enzyme is really inefficient in the presence of oxygen. Certain plants and bacteria have developed work-arounds for protecting this enzyme from oxygen and locally increasing the concentration of CO2, but it’s easy for us to simply grow algae in a bioreactor that’s kept nearly free of oxygen, and pump in lots of CO2 from burning biomass.
There are even more radical proposals for bio-engineering photosynthesis. These are pretty far in the realm of science fiction, but who knows—they may be used to power your oft-promised flying car. The authors of this review suggest a re-engineered algae, something that could only grow in a bioreactor, a slave to our demands for energy. It would have a short life span, because its engineered chlorophylls would absorb all wavelengths of light. It would not grow especially well, because most of the energy it absorbed would be used for making fuel, rather than making more cells. And, since glucose isn’t the best fuel to power your flying car, it would energize electrons from water and use them to make hydrogen gas. Such a system may not achieve the same efficiency of a silicon cell, but the peripherals (processing, hazardous waste produced, etc) may well make it much greener.
There’s no doubt that, sometime in the next century, big oil will be replaced by something else, and that it will probably be solar. The question is, will it be big silicon or big algae?
Robert E. Blankenship et al (2011). Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement. Science 322, 805-809.
*a proton also goes along for the ride, and an electron and a proton together make a hydrogen atom—so chemically, it looks like hydrogen is being added to CO2.
Monday, August 8, 2011
And you thought Moody's downgrade of US Bonds was bad...
A good candidate for "most depressing title of a journal article" would be a report from UC Santa Cruz entitled "Trophic Downgrading of Planet Earth." These cheery six pages illustrate how, in just about every habitat, there used to be a much more complicated food chain (or "trophic web," as is the preferred term) and a richer, more diverse, more ecologically and economically useful biota. In just about every habitat, deliberate or inadvertent human activity has removed a "top predator" from the habitat, resulting in a much simpler ecosystem--and one that is less ecologically and economically useful.
The "top predators" in each ecosystem don't just skim the cream off the ecosystem, they are essential to maintaining its complexity. Unfortunately, top predators are also the most desirable as trophies, the most sensitive to habitat loss, and the most efficient at bioaccumulating toxins. When these species collapse, a complicated, interconnected trophic web abruptly telescopes into a short, simple food chain--often one that favors weeds or invasive species. As the authors put it, "the transitions in ecosystems that characterize such changes are often abrupt...difficult to reverse, and commonly lead to radically different patterns and pathways of energy an material flux and sequestration."
The authors of this paper provide example after example, from every habitat. For instance, it may be hard to see the causal link between eliminating lions and catastrophic fires, but it's there:
No lions-->more cattle-->rinderpest-->no herbivory-->grassland replacement by trees-->fire.
This isn't bunk; in one of the rare cases of good news, rinderpest (a cattle plague) has been declared extinct as the result of a coordinated international effort. There's a direct correlation between disappearance of rinderpest and reestablishment of grassland.
But really, most of the news is bad, in just about every habitat. It takes an extremely willful blindness to just go along as if everything is OK and the environment doesn't need some sort of protection.
You can make your own conclusions about various politicians here. In Miller's book, the people who drove The Simplification--burning libraries, killing scientists and engineers, and destroying machines--were called "simpletons," an appellation they wore with pride. There are certainly many politicians who like things very simple. Maybe these real-life simpletons are happy that we are experiencing a planet-wide simplification.
James A. Estes et al (2011). Trophic Downgrading of Planet Earth. Science 333:301-306.
Miller, Walter M. (1959). A Canticle for Leibowitz. J. B. Lippincott & Co, Philadelphia.


